Addressing the Nagoya Protocol and Access Benefit sharing

Addressing the Nagoya Protocol and Access Benefit sharing

Implications for metagenomics, microbial strain collections, and enzyme discovery using digital sequence information

The Convention on Biological Diversity and its Nagoya Protocol are reshaping how biotechnology companies can access and commercialize biological resources including strains, metagenomes, and digital sequence information (DSI).

Historically, countries in the Global South supplied valuable biological resources while receiving only limited economic benefits. This led to the recognition that biodiversity and genetic resources should be used based on fair compensation rather than exploitation. Under the framework of the Convention on Biological Diversity, international discussions have since focused on protecting biodiversity while ensuring fair access to biological resources, genetic materials, and traditional knowledge. Today, these discussions increasingly include DSI, computational biology, and AI-driven biotechnology applications.

In the jungle of confusing obligations regarding Access and Benefit-sharing (ABS), these proven, proprietary resources are becoming increasingly important from both strategic and regulatory perspectives.

How is the Nagoya Protocol Relevant to our customers?

We discover and develop new enzymes and microorganisms with industrial applications for customers. The two relevant resources for this are: the MetXtra™ database and the BRAIN BioArchive. It is essential to closely monitor all developments related to the Nagoya Protocol and provide customers with a solution they can use with confidence and without regulatory uncertainty. 

MetXtra™ databases: Curated metagenomic sequences for industrial biotechnology

BRAIN Biotech has developed the MetXtra™ database as a continuously growing metagenomic resource derived from Nagoya-compliant sources without ABS obligations. Most metagenomes in the database originate from samples collected in Germany, which has ratified the Nagoya Protocol but has waived sovereign access and ABS claims on its own genetic resources. In addition, the database is expanded to include deep-sea habitat samples through a collaboration with Biodiscovery AS, under identical regulatory conditions. This creates an advantageous framework for compliant metagenomic discovery activities and biotechnology innovation. 

BRAIN BioArchive: Curated microbial diversity for industrial biotechnology

BRAIN Biotech has compiled a collection of microorganisms derived from Nagoya-compliant sources without ABS obligations. Successful microbial strain discovery depends on microbiological expertise, rational strain selection, and the careful design of functional screening assays. Only the most promising microorganisms ultimately become part of the BRAIN BioArchive Value Strain Collections, which are tailored to specific industrial biotechnology applications and customer requirements. Central to industrial biotechnology applications is microbial safety, suitable metabolic pathways and functional performance.

Novelty and outstanding properties also in temperate regions

Exotic environments are not a prerequisite for discovering enzymes and microorganisms with outstanding industrial potential. Projects have repeatedly demonstrated that valuable candidates with suitable characteristics can be found in places like Germany. If new lead candidates from biodiversity require additional optimization to be industrially applicable, BRAIN Biotech uses advanced enzyme and strain engineering technologies to do so.

Working in full compliance with all Nagoya Protocol requirements is a core commitment for us and is ensured through our standard contracting process. Our customers appreciate that our solutions are both fully compliant and commercially practical.

Dr. Esther Gabor - Director, Unit Head Microbial Strain Development

Hands protected by gloves take a container with test tubes out of a freezer.

What Is the Nagoya Protocol and Access & Benefit Sharing (ABS)?

The “Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from Their Utilization” entered into force in 2014 and has since been ratified by more than 140 countries.

A central element of the Nagoya Protocol is Access and Benefit Sharing (ABS). ABS aims to ensure fair compensation for countries and communities that provide access to biological resources and associated genetic information.  Commercial utilization may therefore trigger obligations related to benefit sharing and compensation. To support these objectives, international funding mechanisms have been established to provide financial disbursements to originating countries and Indigenous communities.

Why Digital Sequence Information (DSI) Is Becoming Increasingly Important

Over many years, scientists have created large public DNA databases by sequencing microorganisms and environmental samples from highly diverse ecosystems, including hydrothermal vents, Antarctic environments, marine ecosystems, and terrestrial habitats worldwide. In biotechnology, many well-known industrial tools originate from such unique environments. 

When DNA is isolated and sequenced, the primary value often no longer resides in the physical sample itself but rather in the resulting digital sequence data. Therefore, DSI has become a major focus of international ABS discussions. At the Convention on Biological Diversity meeting in February 2025, the “Cali Fund” was launched to support the sharing of benefits arising from the use of DSI derived from genetic resources.

How the Nagoya Protocol Affects Computational Biology

It is relatively straightforward to understand that the direct use of genetic sequences originating from a Nagoya-compliant source may trigger ABS obligations and potentially royalty payments. However, additional regulatory questions arise when software tools, machine learning systems, and AI models are trained on such data. This creates unresolved regulatory questions for the biotechnology industry: Should AI-trained models based on DSI trigger ABS obligations? How should royalties be calculated? Do synthetic sequences fall within the scope of ABS frameworks?

Complexity and Uncertainty in Global ABS Regulation

One of the major challenges associated with ABS compliance is the fragmented nature of global implementation. Individual countries may establish their own ABS legislation, and some countries even allow regional or local governance structures. For example, India has approximately 270,000 local Biodiversity Management Committees that may need to be consulted when negotiating access to biological diversity.1 This illustrates the operational complexity of properly implementing and complying with ABS regulations, which may be subject to further changes.

The resulting legal uncertainty may ultimately encourage some companies to avoid sourcing biological materials from jurisdictions perceived as legally complex or commercially unpredictable.

Microbial Strain Development and Customer Flexibility

Although the BRAIN BioArchive contains only ABS royalty-free strains, BRAIN Biotech’s strain development services are open to customer strains originating from any region worldwide. As part of the standard onboarding process, BRAIN Biotech reviews and evaluates all relevant Nagoya Protocol and ABS-related obligations associated with customer-provided biological materials.

Recommendation for Industry

  • Companies developing new products based on biological materials, including enzymes and microorganisms, should establish an ABS strategy at an early stage to minimize regulatory risk, protracted contractual negotiations, and potential royalty-exposure.
     
  • Through MetXtra™ and the BRAIN BioArchive, customers gain access to curated, ABS-free metagenomic and microbial resources designed to support compliant innovation in industrial biotechnology while reducing regulatory uncertainty and potential royalty exposure.
     
  • By combining scientific expertise with regulatory-conscious resource development, BRAIN Biotech supports customers in advancing scalable and commercially viable industrial biotechnology programs based on robust biological assets.
Disclaimer

This article reflects industry perspectives on current developments related to the Nagoya Protocol, Access and Benefit Sharing (ABS) and Digital Sequence Information (DSI). It does not constitute legal advice. Companies should consult qualified legal counsel regarding their specific obligations.

Reference

1 Michiels, F. et al. (2021). Facing the Harsh Reality of Access and Benefit Sharing (ABS) Legislation: An Industry Perspective. Sustainability 14(1):277. DOI: 10.3390/su14010277.

Further information - Publications from DSMZ

Policy Briefing: from access to use—untangling the international legal frameworks that govern microbial resources. Sustainable Microbiology. Volume 3, Issue 1, 2026, qvag005. https://doi.org/10.1093/sumbio/qvag005

Policy in practice: How to do the Nagoya Protocol: common misconceptions, challenges and best practices for access and benefit-sharing compliance. Sustainable Microbiology. Volume 3, Issue 1, 2026, qvag007. doi.org/10.1093/sumbio/qvag007

 

Header image: AI generated. 

 

FAQ
What is the Nagoya Protocol?

The Nagoya Protocol is an international agreement under the Convention on Biological Diversity regulating access to genetic resources and the fair sharing of benefits arising from their utilization.

What is Digital Sequence Information (DSI)?

Digital Sequence Information (DSI) refers to digitally stored genetic sequence data derived from biological resources, including DNA and RNA sequence information.

Does the Nagoya Protocol apply to metagenomic databases?

The treatment of metagenomic databases and DSI under ABS frameworks is still evolving. International discussions increasingly focus on whether DSI usage should trigger benefit-sharing obligations.

Why is ABS compliance important for biotechnology companies?

ABS compliance helps biotechnology companies reduce legal, financial and reputational risks associated with the use of genetic resources and Digital Sequence Information.

How does BRAIN Biotech address ABS compliance?

BRAIN Biotech’s MetXtra™ database and BRAIN BioArchive are based on Nagoya-compliant and ABS-royalty-free sources designed to reduce regulatory uncertainty and downstream royalty exposure.

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